Package: tidysdm 0.9.6.9002

Andrea Manica

tidysdm: Species Distribution Models with Tidymodels

Fit species distribution models (SDMs) using the 'tidymodels' framework, which provides a standardised interface to define models and process their outputs. 'tidysdm' expands 'tidymodels' by providing methods for spatial objects, models and metrics specific to SDMs, as well as a number of specialised functions to process occurrences for contemporary and palaeo datasets. The full functionalities of the package are described in Leonardi et al. (2023) <doi:10.1101/2023.07.24.550358>.

Authors:Michela Leonardi [aut], Margherita Colucci [aut], Andrea Vittorio Pozzi [aut], Eleanor M.L. Scerri [aut], Andrea Manica [aut, cre]

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Peer review:

Bug tracker:https://github.com/evolecolgroup/tidysdm/issues

On CRAN:

58 exports 16 stars 2.90 score 114 dependencies 28 scripts 390 downloads

Last updated 1 months agofrom:5752605cdd (on dev). Checks:OK: 7. Indexed: yes.

Exports:%>%add_memberadd_repeatblockcv2rsampleboyce_contboyce_cont_veccalib_class_threshcheck_sdm_presencecheck_splits_balanceclamp_predictorscontrol_ensemble_bayescontrol_ensemble_gridcontrol_ensemble_resamplesdist_pres_vs_bgexplain_tidysdmextrapol_messfeature_classesfilter_collinearfilter_high_corgam_formulageom_split_violingrid_cellsizegrid_offsetkap_maxkap_max_veckm2mmake_mask_from_presencemaxentmaxnet_fitmaxnet_predictniche_overlapoptim_threshplot_pres_vs_bgpredict_rasterregularization_multiplierrepeat_ensemblesample_backgroundsample_background_timesample_pseudoabssample_pseudoabs_timesdm_metric_setsdm_spec_boost_treesdm_spec_gamsdm_spec_glmsdm_spec_maxentsdm_spec_rand_forestsdm_spec_rfsimple_ensemblespatial_initial_splitspatial_recipethin_by_cellthin_by_cell_timethin_by_distthin_by_dist_timetsstss_maxtss_max_vecy2d

Dependencies:backportsbroomcachemclassclassIntcliclockcodetoolscolorspaceconflictedcpp11DALEXDALEXtradata.tableDBIdiagramdialsDiceDesigndigestdoFuturedplyre1071fansifarverfastmapforeachfurrrfuturefuture.applygenericsggplot2glmnetglobalsgluegowerGPfitgridExtragtablehardhatiBreakDowninferingredientsipredisobanditeratorsKernSmoothlabelinglatticelavalhslifecyclelistenvlubridatemagrittrMASSMatrixmaxnetmemoisemgcvmodeldatamodelenvmunsellnlmennetnumDerivparallellyparsnippatchworkpillarpkgconfigprettyunitsprodlimprogressrproxypurrrR6RColorBrewerRcppRcppEigenrecipesrlangrpartrsamplerstudioapis2scalessfsfdshapesliderspatialsampleSQUAREMstringistringrsurvivalterratibbletidymodelstidyrtidyselecttimechangetimeDatetunetzdbunitsutf8vctrsviridisLitewarpwithrwkworkflowsworkflowsetsyardstick