Package: tidypopgen
Title: Tidy Population Genetics
Version: 0.4.4.9002
Authors@R: 
    c(person("Evie", "Carter", role = c("aut")),
    person("Eirlys", "Tysall", role = c("aut")),
    person("Andrea", "Manica", email = "am315@cam.ac.uk", 
           role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0003-1895-450X")),
    person("Chang", "Christopher", role = c("ctb"),
           comment = "Author of Hardy-Weinberg Equilibrium algorithm in PLINK 1.90, used in loci_hwe()"),
    person("Shaun", "Purcell", role = c("ctb"),
           comment = "Author of Hardy-Weinberg Equilibrium algorithm in PLINK 1.90, used in loci_hwe()"),
    person("Bengtsson", "Henrik", role = c("ctb"),
           comment = "Author of countLines in R.utils, modified for .vcf in count_vcf_variants()"))
Description: We provide a tidy grammar of population genetics,
        facilitating the manipulation and analysis of data on biallelic
        single nucleotide polymorphisms (SNPs). 'tidypopgen' scales to
        very large genetic datasets by storing genotypes on disk, and
        performing operations on them in chunks, without ever loading
        all data in memory. The full functionalities of the package are
        described in Carter et al. (2025)
        <doi:10.1111/2041-210x.70204>.
License: GPL (>= 3)
Encoding: UTF-8
Language: en-GB
URL: https://github.com/EvolEcolGroup/tidypopgen,
        https://evolecolgroup.github.io/tidypopgen/
BugReports: https://github.com/EvolEcolGroup/tidypopgen/issues
Roxygen: list(markdown = TRUE)
Depends: R (>= 3.5.0), dplyr (>= 1.2.0), tibble
Imports: bigparallelr, bigsnpr, bigstatsr, foreach, generics, ggplot2,
        methods, MASS, patchwork, runner, rlang, sf, stats, tidyselect,
        tidyr, utils, Rcpp, vctrs, gtable
Suggests: adegenet, admixtools, broom, data.table, hierfstat, knitr,
        detectRUNS, LEA, pcadapt, RhpcBLASctl, rmarkdown,
        rnaturalearth, rnaturalearthdata, readr, reticulate, testthat
        (>= 3.0.0), vcfR, xgboost, spelling
Additional_repositories: https://evolecolgroup.r-universe.dev/
VignetteBuilder: knitr
Config/testthat/edition: 3
LinkingTo: Rcpp, RcppArmadillo (>= 0.9.600), bigstatsr, rmio
LazyData: true
Config/Needs/website: rmarkdown
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev
        libicu-dev libssl-dev libproj-dev libsqlite3-dev
        libudunits2-dev
Repository: https://evolecolgroup.r-universe.dev
Date/Publication: 2026-07-06 09:58:17 UTC
RemoteUrl: https://github.com/EvolEcolGroup/tidypopgen
RemoteRef: dev
RemoteSha: 822f260c0d3cda0ce8ced703bf18b3a8993ca09d
NeedsCompilation: yes
Packaged: 2026-07-06 12:50:11 UTC; root
Author: Evie Carter [aut],
  Eirlys Tysall [aut],
  Andrea Manica [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0003-1895-450X>),
  Chang Christopher [ctb] (Author of Hardy-Weinberg Equilibrium algorithm
    in PLINK 1.90, used in loci_hwe()),
  Shaun Purcell [ctb] (Author of Hardy-Weinberg Equilibrium algorithm in
    PLINK 1.90, used in loci_hwe()),
  Bengtsson Henrik [ctb] (Author of countLines in R.utils, modified for
    .vcf in count_vcf_variants())
Maintainer: Andrea Manica <am315@cam.ac.uk>