Package: pastclim 2.1.0.9002

Andrea Manica

pastclim: Manipulate Time Series of Palaeoclimate Reconstructions

Methods to easily extract and manipulate palaeoclimate reconstructions for ecological and anthropological analyses, as described in Leonardi et al. (2023) <doi:10.1111/ecog.06481>.

Authors:Michela Leonardi [aut], Emily Y. Hallet [ctb], Robert Beyer [ctb], Mario Krapp [ctb], Andrea V. Pozzi [ctb], Andrea Manica [aut, cre]

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pastclim.pdf |pastclim.html✨
pastclim/json (API)
NEWS

# Install 'pastclim' in R:
install.packages('pastclim', repos = c('https://evolecolgroup.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/evolecolgroup/pastclim/issues

Datasets:

On CRAN:

paleoclimate

7.86 score 36 stars 40 scripts 960 downloads 46 exports 34 dependencies

Last updated 2 hours agofrom:adbe58fba4 (on dev). Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 20 2024
R-4.5-winOKNov 20 2024
R-4.5-linuxOKNov 20 2024
R-4.4-winOKNov 20 2024
R-4.4-macOKNov 20 2024
R-4.3-winOKNov 20 2024
R-4.3-macOKNov 20 2024

Exports:bioclim_varsclean_data_pathclimate_for_locationsclimate_for_time_slicedate2ybpdelta_computedelta_downscaledf_from_region_seriesdf_from_region_slicedistance_from_seadownload_datasetdownload_etopodownscale_ice_maskget_available_datasetsget_biome_classesget_data_pathget_downloaded_datasetsget_ice_maskget_land_maskget_mis_time_stepsget_resolutionget_time_bp_stepsget_time_ce_stepsget_time_stepsget_vars_for_datasetis_region_serieskoeppen_geigerlist_available_datasetsload_etopolocation_serieslocation_slicelocation_slice_from_region_seriesmake_land_maskregion_seriesregion_slicesample_region_seriessample_region_sliceset_data_pathslice_region_seriestime_bptime_bp<-time_series_for_locationsupdate_dataset_listvalidate_ncvar_labelsybp2date

Dependencies:abindclassclassIntclicpp11curlDBIe1071FNNgenericsgstatintervalsKernSmoothlatticelubridatemagrittrMASSncdf4proxyRcpprlangs2sfsftimespspacetimestarsterratimechangeunitswkxml2xtszoo

available datasets

Rendered froma1_available_datasets.Rmdusingknitr::rmarkdownon Nov 20 2024.

Last update: 2024-06-18
Started: 2022-10-21

custom dataset

Rendered froma2_custom_datasets.Rmdusingknitr::rmarkdownon Nov 20 2024.

Last update: 2024-09-06
Started: 2022-10-21

delta downscaling

Rendered froma4_delta_downscale_d.Rmdusingknitr::rmarkdownon Nov 20 2024.

Last update: 2024-07-26
Started: 2024-07-26

pastclim overview

Rendered froma0_pastclim_overview.Rmdusingknitr::rmarkdownon Nov 20 2024.

Last update: 2024-06-18
Started: 2022-10-21

present and future

Rendered froma3_pastclim_present_and_future.Rmdusingknitr::rmarkdownon Nov 20 2024.

Last update: 2024-06-18
Started: 2023-07-09

Readme and manuals

Help Manual

Help pageTopics
Documentation for the Barreto et al 2023 datasetBarreto2023
Documentation for the Beyer2020 datasetBeyer2020
Compute bioclimatic variablesbioclim_vars bioclim_vars,matrix,matrix-method bioclim_vars,numeric,numeric-method bioclim_vars,SpatRaster,SpatRaster-method bioclim_vars,SpatRasterDataset,SpatRasterDataset-method
BIOME4 classes.biome4_classes
Documentation for _CHELSA 2.1_CHELSA_2.1
Documentation for _CHELSA-TracCE21k_CHELSA_trace21k_1.0 CHELSA_trace21k_1.0_0.5m_vsi
Clean the data pathclean_data_path
Extract local climate for one or more locations for a given time slice.climate_for_locations
Extract a climate slice for a regionclimate_for_time_slice
Compute a delta raster.delta_compute
Downscale using the delta methoddelta_downscale
Extract data frame from a region seriesdf_from_region_series
Extract data frame from a region slicedf_from_region_slice
Compute a raster of distances from the sea for each land pixel.distance_from_sea
Download palaeoclimate reconstructions.download_dataset
Download the ETOPO Global relief modeldownload_etopo
Downscale an ice maskdownscale_ice_mask
Documentation for the Example datasetExample
Get the available datasets.get_available_datasets
Get the biome classes for a dataset.get_biome_classes
Get the data path where climate reconstructions are storedget_data_path
Get the variables downloaded for each dataset.get_downloaded_datasets
Get the ice mask for a dataset.get_ice_mask
Get the land mask for a dataset.get_land_mask
Get time steps for a given MISget_mis_time_steps
Get resolution of a given datasetget_resolution
Get time steps for a given datasetget_time_bp_steps get_time_ce_steps get_time_steps
Get a list of variables for a given dataset.get_vars_for_dataset
Documentation for _HYDE 3.3_ datasetHYDE_3.3_baseline
Check the object is a valid region seriesis_region_series
Koeppen-Geiger classes.koeppen_classes
Reconstruct biomes based on the Köppen Geiger's classificationkoeppen_geiger koeppen_geiger,matrix,matrix-method koeppen_geiger,SpatRaster,SpatRaster-method koeppen_geiger,SpatRasterDataset,SpatRasterDataset-method
Documentation for the Krapp2021 datasetKrapp2021
List all the available datasets.list_available_datasets
Load the ETOPO global reliefload_etopo
Extract a time series of bioclimatic variables for one or more locations.location_series
Extract local climate for one or more locations for a given time slice.location_slice
Extract local climate for one or more locations for a given time slice.location_slice_from_region_series
Create a land maskmake_land_mask
Time boundaries of marine isotope stages (MIS).mis_boundaries
Documentation for _Paleoclim_paleoclim_1.0 paleoclim_1.0_10m paleoclim_1.0_2.5m paleoclim_1.0_5m
Region extents.region_extent
Region outlines.region_outline
Region outlines unioned.region_outline_union
Extract a time series of climate variables for a regionregion_series
Extract a climate slice for a regionregion_slice
Sample points from a region time seriessample_region_series
Sample points from a region time slicesample_region_slice
Set the data path where climate reconstructions will be storedset_data_path
Extract a slice for a time series of climate variables for a regionslice_region_series
Extract and set time in years before present for SpatRaster and SpatRasterDatasettime_bp time_bp,SpatRaster-method time_bp,SpatRasterDataset-method time_bp<- time_bp<-,SpatRaster-method time_bp<-,SpatRasterDataset-method
Extract a time series of bioclimatic variables for one or more locations.time_series_for_locations
Update the dataset listupdate_dataset_list
Validate an netcdf file for pastclimvalidate_nc
Generate pretty variable labels for plottingvar_labels
Documentation for the WorldClim datasetsWorldClim_2.1
Convert years BP from pastclim to lubridate date, or vice versadate2ybp ybp2date